J5_9QQL_003

3D structure

PDB id

9QQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPS15 P131 Mutant Ribosome POST translocation state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9QQL|1|A2|G|3276, 9QQL|1|A2|G|3281

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQL|1|A2|G|2610
9QQL|1|A2|C|2611
9QQL|1|A2|A|2612
9QQL|1|A2|A|2613
9QQL|1|A2|G|2614
9QQL|1|A2|C|2615
9QQL|1|A2|OMC|2616
9QQL|1|A2|G|2617
9QQL|1|A2|G|2618
*
9QQL|1|A2|U|2642
9QQL|1|A2|G|2643
*
9QQL|1|A2|U|3269
9QQL|1|A2|G|3270
*
9QQL|1|A2|C|3274
9QQL|1|A2|G|3275
9QQL|1|A2|G|3276
9QQL|1|A2|A|3277
9QQL|1|A2|C|3278
9QQL|1|A2|C|3279
9QQL|1|A2|A|3280
9QQL|1|A2|G|3281
9QQL|1|A2|G|3282
*
9QQL|1|A2|C|3491
9QQL|1|A2|A|3492
9QQL|1|A2|C|3493

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain L2

Large ribosomal subunit protein eL19

Chain P2

Large ribosomal subunit protein uL14

Chain Q2

Large ribosomal subunit protein eL24

Chain m2

Small subunit ribosomal RNA; SSU rRNA