J5_9QQL_004

3D structure

PDB id

9QQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPS15 P131 Mutant Ribosome POST translocation state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GA(PSU)GUC*GGU(PSU)UAG*UAGUUU

Length

40 nucleotides

Bulged bases

9QQL|1|A2|A|3564, 9QQL|1|A2|A|4046, 9QQL|1|A2|G|4103, 9QQL|1|A2|U|4104, 9QQL|1|A2|U|4207, 9QQL|1|A2|U|4208

QA status

Modified nucleotides: OMG, 5MC, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQL|1|A2|A|3559
9QQL|1|A2|G|3560
9QQL|1|A2|A|3561
9QQL|1|A2|A|3562
9QQL|1|A2|G|3563
9QQL|1|A2|A|3564
9QQL|1|A2|C|3565
9QQL|1|A2|C|3566
*
9QQL|1|A2|OMG|4044
9QQL|1|A2|G|4045
9QQL|1|A2|A|4046
9QQL|1|A2|U|4047
9QQL|1|A2|A|4048
9QQL|1|A2|A|4049
9QQL|1|A2|C|4050
9QQL|1|A2|U|4051
9QQL|1|A2|G|4052
*
9QQL|1|A2|C|4096
9QQL|1|A2|U|4097
9QQL|1|A2|U|4098
9QQL|1|A2|5MC|4099
9QQL|1|A2|G|4100
9QQL|1|A2|A|4101
9QQL|1|A2|PSU|4102
9QQL|1|A2|G|4103
9QQL|1|A2|U|4104
9QQL|1|A2|C|4105
*
9QQL|1|A2|G|4180
9QQL|1|A2|G|4181
9QQL|1|A2|U|4182
9QQL|1|A2|PSU|4183
9QQL|1|A2|U|4184
9QQL|1|A2|A|4185
9QQL|1|A2|G|4186
*
9QQL|1|A2|U|4204
9QQL|1|A2|A|4205
9QQL|1|A2|G|4206
9QQL|1|A2|U|4207
9QQL|1|A2|U|4208
9QQL|1|A2|U|4209

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Bv

Transfer RNA; tRNA

Chain D2

Large ribosomal subunit protein uL2

Chain E2

Large ribosomal subunit protein uL3

Chain F2

Large ribosomal subunit protein uL4

Chain U2

Large ribosomal subunit protein uL15

Chain V2

Large ribosomal subunit protein eL29