J5_9QQQ_004

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9QQQ|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQQ|1|a|C|47
9QQQ|1|a|G|48
9QQQ|1|a|A|49
9QQQ|1|a|U|50
9QQQ|1|a|G|51
9QQQ|1|a|A|52
9QQQ|1|a|A|53
9QQQ|1|a|G|54
*
9QQQ|1|a|C|116
9QQQ|1|a|G|117
9QQQ|1|a|A|118
9QQQ|1|a|A|119
9QQQ|1|a|U|120
9QQQ|1|a|G|121
*
9QQQ|1|a|C|130
9QQQ|1|a|A|131
*
9QQQ|1|a|U|148
9QQQ|1|a|A|149
9QQQ|1|a|U|150
*
9QQQ|1|a|A|176
9QQQ|1|a|G|177
9QQQ|1|a|G|178

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34