J5_9QRP_001

3D structure

PDB id

9QRP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus seryl-tRNA synthetase bound to tRNA(ser)(GGA) and seryl-adenylate analogue.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUGC*GA*UA*UCG*CC

Length

13 nucleotides

Bulged bases

9QRP|1|T|U|8, 9QRP|1|T|G|9, 9QRP|1|T|C|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_45920.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9QRP|1|T|G|7
9QRP|1|T|U|8
9QRP|1|T|G|9
9QRP|1|T|C|10
*
9QRP|1|T|G|26
9QRP|1|T|A|27
*
9QRP|1|T|U|45||A
9QRP|1|T|A|46||A
*
9QRP|1|T|U|65
9QRP|1|T|C|66
9QRP|1|T|G|67
*
9QRP|1|T|C|83
9QRP|1|T|C|84

Current chains

Chain T

tRNA(Ser), GGA anticodon

Nearby chains

Chain A

Serine--tRNA ligase

Chain B

Serine--tRNA ligase