J5_9QSA_002
3D structure
- PDB id
- 9QSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse Ribosome rotated-1 PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAGU(OMC)*G(2MG)AC*GUUC*GCC*GCAGAU(OMC)
- Length
- 24 nucleotides
- Bulged bases
- 9QSA|1|A2|C|2044, 9QSA|1|A2|U|2105
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9QSA|1|A2|G|1149
9QSA|1|A2|G|1150
9QSA|1|A2|A|1151
9QSA|1|A2|G|1152
9QSA|1|A2|U|1153
9QSA|1|A2|OMC|1154
*
9QSA|1|A2|G|1329
9QSA|1|A2|2MG|1330
9QSA|1|A2|A|1331
9QSA|1|A2|C|1332
*
9QSA|1|A2|G|1471
9QSA|1|A2|U|1472
9QSA|1|A2|U|1473
9QSA|1|A2|C|1474
*
9QSA|1|A2|G|2043
9QSA|1|A2|C|2044
9QSA|1|A2|C|2045
*
9QSA|1|A2|G|2100
9QSA|1|A2|C|2101
9QSA|1|A2|A|2102
9QSA|1|A2|G|2103
9QSA|1|A2|A|2104
9QSA|1|A2|U|2105
9QSA|1|A2|OMC|2106
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F1
- Large ribosomal subunit protein eL13
- Chain F2
- Large ribosomal subunit protein uL4
- Chain H1
- Large ribosomal subunit protein eL15
- Chain U2
- Large ribosomal subunit protein uL15
- Chain Y2
- Large ribosomal subunit protein eL32
- Chain k2
- Large ribosomal subunit protein eL28
Coloring options: