J5_9QSA_003

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9QSA|1|A2|G|3276, 9QSA|1|A2|G|3281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|A2|G|2610
9QSA|1|A2|C|2611
9QSA|1|A2|A|2612
9QSA|1|A2|A|2613
9QSA|1|A2|G|2614
9QSA|1|A2|C|2615
9QSA|1|A2|OMC|2616
9QSA|1|A2|G|2617
9QSA|1|A2|G|2618
*
9QSA|1|A2|U|2642
9QSA|1|A2|G|2643
*
9QSA|1|A2|U|3269
9QSA|1|A2|G|3270
*
9QSA|1|A2|C|3274
9QSA|1|A2|G|3275
9QSA|1|A2|G|3276
9QSA|1|A2|A|3277
9QSA|1|A2|C|3278
9QSA|1|A2|C|3279
9QSA|1|A2|A|3280
9QSA|1|A2|G|3281
9QSA|1|A2|G|3282
*
9QSA|1|A2|C|3491
9QSA|1|A2|A|3492
9QSA|1|A2|C|3493

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain L2

Large ribosomal subunit protein eL19

Chain P2

Large ribosomal subunit protein uL14

Chain Q2

Large ribosomal subunit protein eL24

Chain m2

Small subunit ribosomal RNA; SSU rRNA