J5_9QSA_004

3D structure

PDB id

9QSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-1 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GA(PSU)GUC*GGU(PSU)UAG*UAGUUU

Length

40 nucleotides

Bulged bases

9QSA|1|A2|A|3564, 9QSA|1|A2|A|4046, 9QSA|1|A2|U|4047, 9QSA|1|A2|PSU|4102, 9QSA|1|A2|G|4103, 9QSA|1|A2|U|4104, 9QSA|1|A2|U|4207, 9QSA|1|A2|U|4208

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSA|1|A2|A|3559
9QSA|1|A2|G|3560
9QSA|1|A2|A|3561
9QSA|1|A2|A|3562
9QSA|1|A2|G|3563
9QSA|1|A2|A|3564
9QSA|1|A2|C|3565
9QSA|1|A2|C|3566
*
9QSA|1|A2|OMG|4044
9QSA|1|A2|G|4045
9QSA|1|A2|A|4046
9QSA|1|A2|U|4047
9QSA|1|A2|A|4048
9QSA|1|A2|A|4049
9QSA|1|A2|C|4050
9QSA|1|A2|U|4051
9QSA|1|A2|G|4052
*
9QSA|1|A2|C|4096
9QSA|1|A2|U|4097
9QSA|1|A2|U|4098
9QSA|1|A2|5MC|4099
9QSA|1|A2|G|4100
9QSA|1|A2|A|4101
9QSA|1|A2|PSU|4102
9QSA|1|A2|G|4103
9QSA|1|A2|U|4104
9QSA|1|A2|C|4105
*
9QSA|1|A2|G|4180
9QSA|1|A2|G|4181
9QSA|1|A2|U|4182
9QSA|1|A2|PSU|4183
9QSA|1|A2|U|4184
9QSA|1|A2|A|4185
9QSA|1|A2|G|4186
*
9QSA|1|A2|U|4204
9QSA|1|A2|A|4205
9QSA|1|A2|G|4206
9QSA|1|A2|U|4207
9QSA|1|A2|U|4208
9QSA|1|A2|U|4209

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain By

Nascent protein chain

Chain D2

Large ribosomal subunit protein uL2

Chain E2

Large ribosomal subunit protein uL3

Chain F2

Large ribosomal subunit protein uL4

Chain V2

Large ribosomal subunit protein eL29