Loop J5_9QSA

3D structure

PDB id: 9QSA (explore in PDB, NAKB, or RNA 3D Hub)
Description: Mouse Ribosome rotated-1 PRE state
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Loop

Sequence: GUCGCUCGACUUGGAUAAC*GCUAA(OMU)A(OMC)AUGCCGACGGG*UG*CCGAU*ACGACC
Length: 51 nucleotides
Bulged bases: 9QSA|1|m2|G|126, 9QSA|1|m2|C|127, 9QSA|1|m2|A|141, 9QSA|1|m2|C|142, 9QSA|1|m2|U|143, 9QSA|1|m2|OMU|172
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9QSA|1|m2|G|123
9QSA|1|m2|U|124
9QSA|1|m2|C|125
9QSA|1|m2|G|126
9QSA|1|m2|C|127
9QSA|1|m2|U|128
9QSA|1|m2|C|129
9QSA|1|m2|G|130
9QSA|1|m2|A|141
9QSA|1|m2|C|142
9QSA|1|m2|U|143
9QSA|1|m2|U|144
9QSA|1|m2|G|145
9QSA|1|m2|G|146
9QSA|1|m2|A|147
9QSA|1|m2|U|148
9QSA|1|m2|A|149
9QSA|1|m2|A|150
9QSA|1|m2|C|151
*
9QSA|1|m2|G|167
9QSA|1|m2|C|168
9QSA|1|m2|U|169
9QSA|1|m2|A|170
9QSA|1|m2|A|171
9QSA|1|m2|OMU|172
9QSA|1|m2|A|173
9QSA|1|m2|OMC|174
9QSA|1|m2|A|175
9QSA|1|m2|U|176
9QSA|1|m2|G|177
9QSA|1|m2|C|178
9QSA|1|m2|C|179
9QSA|1|m2|G|180
9QSA|1|m2|A|181
9QSA|1|m2|C|182
9QSA|1|m2|G|183
9QSA|1|m2|G|184
9QSA|1|m2|G|185
*
9QSA|1|m2|U|216
9QSA|1|m2|G|217
*
9QSA|1|m2|C|312
9QSA|1|m2|C|313
9QSA|1|m2|G|314
9QSA|1|m2|A|315
9QSA|1|m2|U|316
*
9QSA|1|m2|A|338
9QSA|1|m2|C|339
9QSA|1|m2|G|340
9QSA|1|m2|A|341
9QSA|1|m2|C|342
9QSA|1|m2|C|343

Current chains

Chain m2: 18S ribosomal RNA

Nearby chains

Chain K3: Small ribosomal subunit protein eS6
Chain Q3: Small ribosomal subunit protein eS24
Chain r2: Small ribosomal subunit protein eS4
Chain u2: Small ribosomal subunit protein eS8

J5_9QSA_009