J5_9QSJ_004

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9QSJ|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSJ|1|a|C|47
9QSJ|1|a|G|48
9QSJ|1|a|A|49
9QSJ|1|a|U|50
9QSJ|1|a|G|51
9QSJ|1|a|A|52
9QSJ|1|a|A|53
9QSJ|1|a|G|54
*
9QSJ|1|a|C|116
9QSJ|1|a|G|117
9QSJ|1|a|A|118
9QSJ|1|a|A|119
9QSJ|1|a|U|120
9QSJ|1|a|G|121
*
9QSJ|1|a|C|130
9QSJ|1|a|A|131
*
9QSJ|1|a|U|148
9QSJ|1|a|A|149
9QSJ|1|a|U|150
*
9QSJ|1|a|A|176
9QSJ|1|a|G|177
9QSJ|1|a|G|178

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34