J5_9R9O_005
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9R9O|1|C1|A|2404, 9R9O|1|C1|A|2817, 9R9O|1|C1|G|2874, 9R9O|1|C1|U|2978, 9R9O|1|C1|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9R9O|1|C1|A|2399
9R9O|1|C1|G|2400
9R9O|1|C1|A|2401
9R9O|1|C1|A|2402
9R9O|1|C1|G|2403
9R9O|1|C1|A|2404
9R9O|1|C1|C|2405
9R9O|1|C1|C|2406
*
9R9O|1|C1|G|2815
9R9O|1|C1|G|2816
9R9O|1|C1|A|2817
9R9O|1|C1|U|2818
9R9O|1|C1|A|2819
9R9O|1|C1|A|2820
9R9O|1|C1|C|2821
9R9O|1|C1|U|2822
9R9O|1|C1|G|2823
*
9R9O|1|C1|C|2867
9R9O|1|C1|U|2868
9R9O|1|C1|U|2869
9R9O|1|C1|C|2870
9R9O|1|C1|G|2871
9R9O|1|C1|A|2872
9R9O|1|C1|U|2873
9R9O|1|C1|G|2874
9R9O|1|C1|U|2875
9R9O|1|C1|C|2876
*
9R9O|1|C1|G|2951
9R9O|1|C1|G|2952
9R9O|1|C1|U|2953
9R9O|1|C1|U|2954
9R9O|1|C1|U|2955
9R9O|1|C1|A|2956
9R9O|1|C1|G|2957
*
9R9O|1|C1|U|2975
9R9O|1|C1|A|2976
9R9O|1|C1|G|2977
9R9O|1|C1|U|2978
9R9O|1|C1|U|2979
9R9O|1|C1|U|2980
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain B
- Phosphoglycerate kinase
- Chain LA
- 60S ribosomal protein L2-A
- Chain LB
- 60S ribosomal protein L3
- Chain LC
- 60S ribosomal protein L4-A
- Chain La
- 60S ribosomal protein L28
- Chain Lb
- 60S ribosomal protein L29
Coloring options: