J5_9R9O_006
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9R9O|1|C1|G|2418, 9R9O|1|C1|A|2799, 9R9O|1|C1|G|2800, 9R9O|1|C1|A|2801, 9R9O|1|C1|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9R9O|1|C1|U|2416
9R9O|1|C1|U|2417
9R9O|1|C1|G|2418
9R9O|1|C1|A|2419
*
9R9O|1|C1|U|2611
9R9O|1|C1|U|2612
9R9O|1|C1|U|2613
9R9O|1|C1|G|2614
*
9R9O|1|C1|C|2627
9R9O|1|C1|A|2628
*
9R9O|1|C1|U|2650
9R9O|1|C1|G|2651
*
9R9O|1|C1|C|2798
9R9O|1|C1|A|2799
9R9O|1|C1|G|2800
9R9O|1|C1|A|2801
9R9O|1|C1|A|2802
9R9O|1|C1|A|2803
9R9O|1|C1|A|2804
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-A
- Chain LN
- 60S ribosomal protein L15-A
- Chain LQ
- 60S ribosomal protein L18-A
- Chain LT
- 60S ribosomal protein L21-A
- Chain La
- 60S ribosomal protein L28
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L42-A
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