J5_9R9O_007

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

9R9O|1|C2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9R9O_007 not in the Motif Atlas

Homologous match to J5_9PN5_007

Geometric discrepancy: 0.0875

The information below is about J5_9PN5_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_04786.3

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9R9O|1|C2|C|31
9R9O|1|C2|U|32
9R9O|1|C2|U|33
9R9O|1|C2|G|34
9R9O|1|C2|U|35
*
9R9O|1|C2|A|473
9R9O|1|C2|A|474
9R9O|1|C2|A|475
9R9O|1|C2|U|476
9R9O|1|C2|A|477
9R9O|1|C2|A|478
9R9O|1|C2|C|479
*
9R9O|1|C2|G|509
9R9O|1|C2|G|510
9R9O|1|C2|A|511
9R9O|1|C2|A|512
9R9O|1|C2|U|513
9R9O|1|C2|G|514
*
9R9O|1|C2|C|543
9R9O|1|C2|A|544
9R9O|1|C2|A|545
9R9O|1|C2|U|546
*
9R9O|1|C2|A|592
9R9O|1|C2|U|593
9R9O|1|C2|A|594
9R9O|1|C2|G|595

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S30-A