J5_9RHU_002
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CUUG(PSU)*AAAUAAC*GGAAUGAG*CGAGG(A2M)UCCAU*AUA(OMG)
- Length
- 35 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RHU|1|A1|C|30
9RHU|1|A1|U|31
9RHU|1|A1|U|32
9RHU|1|A1|G|33
9RHU|1|A1|PSU|34
*
9RHU|1|A1|A|522
9RHU|1|A1|A|523
9RHU|1|A1|A|524
9RHU|1|A1|U|525
9RHU|1|A1|A|526
9RHU|1|A1|A|527
9RHU|1|A1|C|528
*
9RHU|1|A1|G|559
9RHU|1|A1|G|560
9RHU|1|A1|A|561
9RHU|1|A1|A|562
9RHU|1|A1|U|563
9RHU|1|A1|G|564
9RHU|1|A1|A|565
9RHU|1|A1|G|566
*
9RHU|1|A1|C|586
9RHU|1|A1|G|587
9RHU|1|A1|A|588
9RHU|1|A1|G|589
9RHU|1|A1|G|590
9RHU|1|A1|A2M|591
9RHU|1|A1|U|592
9RHU|1|A1|C|593
9RHU|1|A1|C|594
9RHU|1|A1|A|595
9RHU|1|A1|U|596
*
9RHU|1|A1|A|642
9RHU|1|A1|U|643
9RHU|1|A1|A|644
9RHU|1|A1|OMG|645
Current chains
- Chain A1
- 18S rRNA
Nearby chains
- Chain E1
- 40S ribosomal protein eS30
- Chain U1
- Small ribosomal subunit protein uS4
- Chain i1
- 40S ribosomal protein S23
Coloring options: