J5_9RHU_004

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9RHU|1|A1|G|126, 9RHU|1|A1|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A1|G|123
9RHU|1|A1|U|124
9RHU|1|A1|C|125
9RHU|1|A1|G|126
9RHU|1|A1|C|127
9RHU|1|A1|U|128
9RHU|1|A1|C|129
*
9RHU|1|A1|G|183
9RHU|1|A1|G|184
9RHU|1|A1|G|185
*
9RHU|1|A1|U|214
9RHU|1|A1|G|215
*
9RHU|1|A1|C|311
9RHU|1|A1|C|312
9RHU|1|A1|G|313
*
9RHU|1|A1|C|338
9RHU|1|A1|G|339
9RHU|1|A1|A|340
9RHU|1|A1|C|341
9RHU|1|A1|C|342

Current chains

Chain A1

18S rRNA

Nearby chains

Chain P1

40S ribosomal protein S4

Chain R1

40S ribosomal protein S6

Chain T1

40S ribosomal protein S8