J5_9RHU_008
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9RHU|1|A3|A|4140, 9RHU|1|A3|G|4197, 9RHU|1|A3|U|4198, 9RHU|1|A3|U|4301, 9RHU|1|A3|U|4302
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RHU|1|A3|A|3635
9RHU|1|A3|G|3636
9RHU|1|A3|A|3637
9RHU|1|A3|A|3638
9RHU|1|A3|G|3639
9RHU|1|A3|A|3640
9RHU|1|A3|C|3641
9RHU|1|A3|C|3642
*
9RHU|1|A3|OMG|4138
9RHU|1|A3|G|4139
9RHU|1|A3|A|4140
9RHU|1|A3|U|4141
9RHU|1|A3|A|4142
9RHU|1|A3|A|4143
9RHU|1|A3|C|4144
9RHU|1|A3|U|4145
9RHU|1|A3|G|4146
*
9RHU|1|A3|C|4190
9RHU|1|A3|U|4191
9RHU|1|A3|U|4192
9RHU|1|A3|5MC|4193
9RHU|1|A3|G|4194
9RHU|1|A3|A|4195
9RHU|1|A3|U|4196
9RHU|1|A3|G|4197
9RHU|1|A3|U|4198
9RHU|1|A3|C|4199
*
9RHU|1|A3|G|4274
9RHU|1|A3|G|4275
9RHU|1|A3|UR3|4276
9RHU|1|A3|U|4277
9RHU|1|A3|PSU|4278
9RHU|1|A3|A|4279
9RHU|1|A3|G|4280
*
9RHU|1|A3|PSU|4298
9RHU|1|A3|A|4299
9RHU|1|A3|G|4300
9RHU|1|A3|U|4301
9RHU|1|A3|U|4302
9RHU|1|A3|U|4303
Current chains
- Chain A3
- 28S rRNA
Nearby chains
- Chain D3
- Large ribosomal subunit protein uL2
- Chain E3
- Ribosomal protein L3
- Chain F3
- Large ribosomal subunit protein uL4
- Chain G2
- Choriogonadotropin subunit beta variant 1,Genome polyprotein,Genome polyprotein
- Chain K1
- Transfer RNA; tRNA
- Chain W2
- 60S ribosomal protein L27a
- Chain X2
- 60S ribosomal protein L29
- Chain p2
- Eukaryotic peptide chain release factor subunit 1
Coloring options: