J5_9RHU_009
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9RHU|1|A3|G|3654, 9RHU|1|A3|A|4122, 9RHU|1|A3|G|4123, 9RHU|1|A3|A|4124, 9RHU|1|A3|A|4125
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RHU|1|A3|PSU|3652
9RHU|1|A3|U|3653
9RHU|1|A3|G|3654
9RHU|1|A3|A|3655
*
9RHU|1|A3|U|3934
9RHU|1|A3|U|3935
9RHU|1|A3|U|3936
9RHU|1|A3|G|3937
*
9RHU|1|A3|C|3950
9RHU|1|A3|A|3951
*
9RHU|1|A3|OMU|3973
9RHU|1|A3|OMG|3974
*
9RHU|1|A3|C|4121
9RHU|1|A3|A|4122
9RHU|1|A3|G|4123
9RHU|1|A3|A|4124
9RHU|1|A3|A|4125
9RHU|1|A3|A|4126
9RHU|1|A3|A|4127
Current chains
- Chain A3
- 28S rRNA
Nearby chains
- Chain D3
- Large ribosomal subunit protein uL2
- Chain J1
- Transfer RNA; tRNA
- Chain J2
- Ribosomal protein L15
- Chain M2
- eL18
- Chain P2
- 60S ribosomal protein L21
- Chain W2
- 60S ribosomal protein L27a
- Chain X2
- 60S ribosomal protein L29
- Chain j2
- Ribosomal protein L36a
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