J5_9RJA_003
3D structure
- PDB id
- 9RJA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Manikomycin bound to the Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9RJA|1|A|A|109, 9RJA|1|A|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9RJA_003 not in the Motif Atlas
- Homologous match to J5_6CZR_021
- Geometric discrepancy: 0.1373
- The information below is about J5_6CZR_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.5
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9RJA|1|A|C|58
9RJA|1|A|A|59
9RJA|1|A|A|60
9RJA|1|A|G|61
*
9RJA|1|A|C|106
9RJA|1|A|G|107
9RJA|1|A|G|108
9RJA|1|A|A|109
9RJA|1|A|C|110
9RJA|1|A|G|111
9RJA|1|A|G|112
9RJA|1|A|G|113
*
9RJA|1|A|C|314
9RJA|1|A|A|315
9RJA|1|A|C|316
*
9RJA|1|A|G|337
9RJA|1|A|A|338
9RJA|1|A|C|339
*
9RJA|1|A|G|350
9RJA|1|A|G|351
9RJA|1|A|C|352
9RJA|1|A|A|353
9RJA|1|A|G|354
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain P
- 30S ribosomal protein S16
- Chain T
- 30S ribosomal protein S20
- Chain j
- Large ribosomal subunit protein uL14
- Chain o
- Large ribosomal subunit protein bL19
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