J5_9RPV_014
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 26 nucleotides
- Bulged bases
- 9RPV|1|S3|C|593
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9RPV_014 not in the Motif Atlas
- Homologous match to J5_9H3G_007
- Geometric discrepancy: 0.0722
- The information below is about J5_9H3G_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_04786.3
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9RPV|1|S3|C|30
9RPV|1|S3|U|31
9RPV|1|S3|U|32
9RPV|1|S3|G|33
9RPV|1|S3|PSU|34
*
9RPV|1|S3|A|521
9RPV|1|S3|A|522
9RPV|1|S3|A|523
9RPV|1|S3|U|524
9RPV|1|S3|A|525
9RPV|1|S3|A|526
9RPV|1|S3|C|527
*
9RPV|1|S3|G|558
9RPV|1|S3|G|559
9RPV|1|S3|A|560
9RPV|1|S3|A|561
9RPV|1|S3|U|562
9RPV|1|S3|G|563
*
9RPV|1|S3|C|592
9RPV|1|S3|C|593
9RPV|1|S3|A|594
9RPV|1|S3|U|595
*
9RPV|1|S3|A|641
9RPV|1|S3|U|642
9RPV|1|S3|A|643
9RPV|1|S3|OMG|644
Current chains
- Chain S3
- 18S rRNA of the stalled 80S
Nearby chains
- Chain RJ
- 40S ribosomal protein S9
- Chain RX
- 40S ribosomal protein S23
- Chain Re
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
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