J5_9RPV_016
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9RPV|1|S3|A|92, 9RPV|1|S3|C|472
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9RPV_016 not in the Motif Atlas
- Homologous match to J5_9PN5_009
- Geometric discrepancy: 0.0603
- The information below is about J5_9PN5_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9RPV|1|S3|C|53
9RPV|1|S3|A|54
9RPV|1|S3|U|55
9RPV|1|S3|G|56
*
9RPV|1|S3|C|89
9RPV|1|S3|G|90
9RPV|1|S3|A|91
9RPV|1|S3|A|92
9RPV|1|S3|PSU|93
9RPV|1|S3|G|94
9RPV|1|S3|G|95
9RPV|1|S3|C|96
*
9RPV|1|S3|G|434
9RPV|1|S3|A|435
9RPV|1|S3|OMG|436
*
9RPV|1|S3|C|457
9RPV|1|S3|A|458
9RPV|1|S3|C|459
*
9RPV|1|S3|G|470
9RPV|1|S3|G|471
9RPV|1|S3|C|472
9RPV|1|S3|A|473
9RPV|1|S3|G|474
Current chains
- Chain S3
- 18S rRNA of the stalled 80S
Nearby chains
- Chain MV
- 60S ribosomal protein L23
- Chain RE
- Small ribosomal subunit protein eS4, X isoform
- Chain RG
- 40S ribosomal protein S6
- Chain RI
- 40S ribosomal protein S8
- Chain RJ
- 40S ribosomal protein S9
- Chain RY
- 40S ribosomal protein S24
Coloring options: