J5_9RVC_004
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 9RVC|1|a|U|301, 9RVC|1|a|U|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RVC|1|a|C|271
9RVC|1|a|C|272
9RVC|1|a|A|273
9RVC|1|a|A|274
9RVC|1|a|A|275
9RVC|1|a|C|276
*
9RVC|1|a|G|295
9RVC|1|a|G|296
9RVC|1|a|G|297
9RVC|1|a|U|298
9RVC|1|a|U|299
9RVC|1|a|G|300
9RVC|1|a|U|301
9RVC|1|a|A|302
*
9RVC|1|a|U|415
9RVC|1|a|G|416
9RVC|1|a|A|417
9RVC|1|a|G|418
9RVC|1|a|U|419
9RVC|1|a|A|420
9RVC|1|a|C|421
*
9RVC|1|a|G|445
9RVC|1|a|G|446
9RVC|1|a|A|447
9RVC|1|a|A|448
9RVC|1|a|U|449
9RVC|1|a|C|450
9RVC|1|a|U|451
9RVC|1|a|G|452
*
9RVC|1|a|U|467
9RVC|1|a|A|468
9RVC|1|a|A|469
9RVC|1|a|G|470
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: