J5_9RVC_008
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUCAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 9RVC|1|a|A|2089, 9RVC|1|a|A|2475, 9RVC|1|a|U|2476, 9RVC|1|a|U|2612, 9RVC|1|a|U|2636
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RVC|1|a|G|2084
9RVC|1|a|A|2085
9RVC|1|a|A|2086
9RVC|1|a|A|2087
9RVC|1|a|G|2088
9RVC|1|a|A|2089
9RVC|1|a|C|2090
9RVC|1|a|C|2091
*
9RVC|1|a|G|2473
9RVC|1|a|G|2474
9RVC|1|a|A|2475
9RVC|1|a|U|2476
9RVC|1|a|A|2477
9RVC|1|a|A|2478
9RVC|1|a|C|2479
9RVC|1|a|A|2480
*
9RVC|1|a|U|2527
9RVC|1|a|C|2528
9RVC|1|a|G|2529
9RVC|1|a|A|2530
9RVC|1|a|U|2531
9RVC|1|a|G|2532
9RVC|1|a|U|2533
*
9RVC|1|a|G|2610
9RVC|1|a|U|2611
9RVC|1|a|U|2612
9RVC|1|a|C|2613
9RVC|1|a|A|2614
9RVC|1|a|G|2615
*
9RVC|1|a|C|2633
9RVC|1|a|G|2634
9RVC|1|a|G|2635
9RVC|1|a|U|2636
9RVC|1|a|C|2637
9RVC|1|a|C|2638
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Y
- Transfer RNA; tRNA
- Chain Z
- Transfer RNA; tRNA
- Chain c
- Large ribosomal subunit protein uL2
- Chain d
- Large ribosomal subunit protein uL3
- Chain e
- Large ribosomal subunit protein uL4
- Chain k
- Large ribosomal subunit protein uL15
- Chain l
- Large ribosomal subunit protein uL16
- Chain r
- Large ribosomal subunit protein uL22
- Chain v
- Large ribosomal subunit protein bL27
- Chain z
- Large ribosomal subunit protein bL32
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