J5_9SDF_001

3D structure

PDB id

9SDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure at 1.9 A resolution of Thermus thermophilus tyrosyl-tRNA synthetase bound to wild-type modified tRNA(Tyr), tyrosine and AMP

Experimental method

X-RAY DIFFRACTION

Resolution

1.9 Å

Loop

Sequence

G(4SU)GC*GG*UG*CUUCG*CC

Length

15 nucleotides

Bulged bases

9SDF|1|T|4SU|8, 9SDF|1|T|G|9, 9SDF|1|T|C|58

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_87118.1

Basepair signature

cWW-cWW-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

3

Unit IDs

9SDF|1|T|G|7
9SDF|1|T|4SU|8
9SDF|1|T|G|9
9SDF|1|T|C|10
*
9SDF|1|T|G|26
9SDF|1|T|G|27
*
9SDF|1|T|U|45
9SDF|1|T|G|46
*
9SDF|1|T|C|55
9SDF|1|T|U|56
9SDF|1|T|U|57
9SDF|1|T|C|58
9SDF|1|T|G|59
*
9SDF|1|T|C|75
9SDF|1|T|C|76

Current chains

Chain T

Thermus thermophilus tRNA(Tyr)(GUA) (86-MER)

Nearby chains

Chain A

Tyrosine--tRNA ligase