Motif J5_87118.1 Version J5_87118.1 of this group appears in releases 4.1 to 4.1
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | break | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 2-3 | 4-5 | 6-7 | 11-12 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J5_9SDF_001 | 9SDF | 0.3550 | 2 | T | tRNA | G | 7 | C | 10 | * | G | 26 | G | 27 | * | U | 45 | G | 46 | * | C | 55 | U | 56 | U | 57 | C | 58 | G | 59 | * | C | 75 | C | 76 | cWW | cWW | cWW | cWW | cWW |
2 | J5_2ZZM_001 | 2ZZM | 0.0000 | 2 | B | tRNA | G | 7 | G | 10 | * | C | 25 | G | 26 | * | U | 44 | C | 45 | * | G | 47|||G | U | 47|||H | U | 47|||I | C | 48 | C | 49 | * | G | 65 | C | 66 | cWW | cWW | cWW | cWW | cWW |
3 | J5_1WZ2_002 | 1WZ2 | 0.2052 | 2 | D | tRNA | G | 907 | G | 910 | * | C | 928 | G | 929 | * | U | 947 | C | 948 | * | G | 957 | U | 958 | U | 959 | C | 960 | C | 961 | * | G | 977 | C | 978 | cWW | cWW | ncWW | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
G(4SU)GC*GG*UG*CUUCG*CC | 1 |
GUCG*CG*UC*GUUCC*GC | 1 |
GUUG*CG*UC*GUUCC*GC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
(4SU)G***UUC* | 1 |
UC***UUC* | 1 |
UU***UUC* | 1 |
Release history
Release | 4.1 |
---|---|
Date | 2025-09-10 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-cWW-cWW-F-F-cWW-F
- Heat map statistics
- Min 0.21 | Avg 0.21 | Max 0.38
Coloring options: