J5_9SLG_004

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9SLG|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SLG|1|a|C|47
9SLG|1|a|G|48
9SLG|1|a|A|49
9SLG|1|a|U|50
9SLG|1|a|G|51
9SLG|1|a|A|52
9SLG|1|a|A|53
9SLG|1|a|G|54
*
9SLG|1|a|C|116
9SLG|1|a|G|117
9SLG|1|a|A|118
9SLG|1|a|A|119
9SLG|1|a|U|120
9SLG|1|a|G|121
*
9SLG|1|a|C|130
9SLG|1|a|A|131
*
9SLG|1|a|U|148
9SLG|1|a|A|149
9SLG|1|a|U|150
*
9SLG|1|a|A|176
9SLG|1|a|G|177
9SLG|1|a|G|178

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34