J5_9SLG_010
3D structure
- PDB id
- 9SLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9SLG|1|a|U|2080, 9SLG|1|a|G|2432, 9SLG|1|a|G|2433, 9SLG|1|a|A|2434, 9SLG|1|a|U|2435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9SLG_010 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.0936
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9SLG|1|a|U|2078
9SLG|1|a|U|2079
9SLG|1|a|U|2080
9SLG|1|a|A|2081
*
9SLG|1|a|U|2247
9SLG|1|a|U|2248
9SLG|1|a|U|2249
9SLG|1|a|G|2250
*
9SLG|1|a|C|2262
9SLG|1|a|U|2263
*
9SLG|1|a|A|2285
9SLG|1|a|G|2286
*
9SLG|1|a|C|2431
9SLG|1|a|G|2432
9SLG|1|a|G|2433
9SLG|1|a|A|2434
9SLG|1|a|U|2435
9SLG|1|a|A|2436
9SLG|1|a|A|2437
9SLG|1|a|A|2438
9SLG|1|a|A|2439
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL33
- Chain 2
- Large ribosomal subunit protein bL35
- Chain c
- Large ribosomal subunit protein uL2
- Chain k
- Large ribosomal subunit protein uL15
- Chain v
- Large ribosomal subunit protein bL27
- Chain w
- Large ribosomal subunit protein bL28
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