J5_9SRA_006
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAG*(4AC)GCAG*CGACAUG*CGG*CGGAG
- Length
- 24 nucleotides
- Bulged bases
- 9SRA|1|1|A|850, 9SRA|1|1|G|903
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9SRA_006 not in the Motif Atlas
- Homologous match to J5_4V9F_005
- Geometric discrepancy: 0.0747
- The information below is about J5_4V9F_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63867.1
- Basepair signature
- cWW-F-F-F-F-cWW-cHW-cWW-F-F-cWW-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9SRA|1|1|C|807
9SRA|1|1|G|808
9SRA|1|1|A|809
9SRA|1|1|G|810
*
9SRA|1|1|4AC|835
9SRA|1|1|G|836
9SRA|1|1|C|837
9SRA|1|1|A|838
9SRA|1|1|G|839
*
9SRA|1|1|C|846
9SRA|1|1|G|847
9SRA|1|1|A|848
9SRA|1|1|C|849
9SRA|1|1|A|850
9SRA|1|1|U|851
9SRA|1|1|G|852
*
9SRA|1|1|C|884
9SRA|1|1|G|885
9SRA|1|1|G|886
*
9SRA|1|1|C|901
9SRA|1|1|G|902
9SRA|1|1|G|903
9SRA|1|1|A|904
9SRA|1|1|G|905
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BL
- Large ribosomal subunit protein uL15
- Chain BP
- Large ribosomal subunit protein eL18
Coloring options: