J5_9SRB_008
3D structure
- PDB id
- 9SRB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCAAACUGG*UG*UC*GUGACUAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 9SRB|1|1|G|2014, 9SRB|1|1|G|2019
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9SRB_008 not in the Motif Atlas
- Homologous match to J5_4V9F_006
- Geometric discrepancy: 0.0917
- The information below is about J5_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.3
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9SRB|1|1|G|1950
9SRB|1|1|C|1951
9SRB|1|1|A|1952
9SRB|1|1|A|1953
9SRB|1|1|A|1954
9SRB|1|1|C|1955
9SRB|1|1|U|1956
9SRB|1|1|G|1957
9SRB|1|1|G|1958
*
9SRB|1|1|U|1982
9SRB|1|1|G|1983
*
9SRB|1|1|U|2007
9SRB|1|1|C|2008
*
9SRB|1|1|G|2012
9SRB|1|1|U|2013
9SRB|1|1|G|2014
9SRB|1|1|A|2015
9SRB|1|1|C|2016
9SRB|1|1|U|2017
9SRB|1|1|A|2018
9SRB|1|1|G|2019
9SRB|1|1|G|2020
*
9SRB|1|1|C|2229
9SRB|1|1|G|2230
9SRB|1|1|C|2231
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain BC
- Large ribosomal subunit protein uL3
- Chain BJ
- Large ribosomal subunit protein uL14
- Chain BQ
- Large ribosomal subunit protein eL19
- Chain BV
- Large ribosomal subunit protein eL24
Coloring options: