J5_9SRO_003

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9SRO|1|A|A|109, 9SRO|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9SRO_003 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.1137

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9SRO|1|A|C|58
9SRO|1|A|A|59
9SRO|1|A|A|60
9SRO|1|A|G|61
*
9SRO|1|A|C|106
9SRO|1|A|G|107
9SRO|1|A|G|108
9SRO|1|A|A|109
9SRO|1|A|C|110
9SRO|1|A|G|111
9SRO|1|A|G|112
9SRO|1|A|G|113
*
9SRO|1|A|C|314
9SRO|1|A|A|315
9SRO|1|A|C|316
*
9SRO|1|A|G|337
9SRO|1|A|A|338
9SRO|1|A|C|339
*
9SRO|1|A|G|350
9SRO|1|A|G|351
9SRO|1|A|C|352
9SRO|1|A|A|353
9SRO|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20

Chain j

Large ribosomal subunit protein uL14