J5_9SS0_003

3D structure

PDB id

9SS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9SS0|1|D1|A|109, 9SS0|1|D1|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9SS0_003 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.1274

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9SS0|1|D1|C|58
9SS0|1|D1|A|59
9SS0|1|D1|A|60
9SS0|1|D1|G|61
*
9SS0|1|D1|C|106
9SS0|1|D1|G|107
9SS0|1|D1|G|108
9SS0|1|D1|A|109
9SS0|1|D1|C|110
9SS0|1|D1|G|111
9SS0|1|D1|G|112
9SS0|1|D1|G|113
*
9SS0|1|D1|C|314
9SS0|1|D1|A|315
9SS0|1|D1|C|316
*
9SS0|1|D1|G|337
9SS0|1|D1|A|338
9SS0|1|D1|C|339
*
9SS0|1|D1|G|350
9SS0|1|D1|G|351
9SS0|1|D1|C|352
9SS0|1|D1|A|353
9SS0|1|D1|G|354

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AO

Small ribosomal subunit protein bS16

Chain AS

Small ribosomal subunit protein bS20