J5_9SS2_003

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9SS2|1|D1|A|109, 9SS2|1|D1|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9SS2_003 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.1125

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9SS2|1|D1|C|58
9SS2|1|D1|A|59
9SS2|1|D1|A|60
9SS2|1|D1|G|61
*
9SS2|1|D1|C|106
9SS2|1|D1|G|107
9SS2|1|D1|G|108
9SS2|1|D1|A|109
9SS2|1|D1|C|110
9SS2|1|D1|G|111
9SS2|1|D1|G|112
9SS2|1|D1|G|113
*
9SS2|1|D1|C|314
9SS2|1|D1|A|315
9SS2|1|D1|C|316
*
9SS2|1|D1|G|337
9SS2|1|D1|A|338
9SS2|1|D1|C|339
*
9SS2|1|D1|G|350
9SS2|1|D1|G|351
9SS2|1|D1|C|352
9SS2|1|D1|A|353
9SS2|1|D1|G|354

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AO

Small ribosomal subunit protein bS16

Chain AS

Small ribosomal subunit protein bS20