J5_9SS4_003
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9SS4|1|D2|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9SS4_003 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.0748
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9SS4|1|D2|C|584
9SS4|1|D2|G|585
9SS4|1|D2|A|586
9SS4|1|D2|C|587
9SS4|1|D2|U|588
9SS4|1|D2|U|589
*
9SS4|1|D2|A|668
9SS4|1|D2|G|669
9SS4|1|D2|A|670
9SS4|1|D2|C|671
*
9SS4|1|D2|G|809
9SS4|1|D2|U|810
9SS4|1|D2|U|811
9SS4|1|D2|C|812
*
9SS4|1|D2|G|1195
9SS4|1|D2|C|1196
*
9SS4|1|D2|G|1250
9SS4|1|D2|C|1251
9SS4|1|D2|G|1252
9SS4|1|D2|A|1253
9SS4|1|D2|A|1254
9SS4|1|D2|U|1255
9SS4|1|D2|G|1256
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B8
- Large ribosomal subunit protein bL35
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BO
- Large ribosomal subunit protein uL15
- Chain BT
- Large ribosomal subunit protein bL20
- Chain BU
- Large ribosomal subunit protein bL21
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