J5_9SS4_005
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 9SS4|1|D2|A|2062, 9SS4|1|D2|A|2448, 9SS4|1|D2|U|2449, 9SS4|1|D2|U|2506, 9SS4|1|D2|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SS4|1|D2|G|2057
9SS4|1|D2|A|2058
9SS4|1|D2|A|2059
9SS4|1|D2|A|2060
9SS4|1|D2|G|2061
9SS4|1|D2|A|2062
9SS4|1|D2|C|2063
9SS4|1|D2|C|2064
*
9SS4|1|D2|G|2446
9SS4|1|D2|G|2447
9SS4|1|D2|A|2448
9SS4|1|D2|U|2449
9SS4|1|D2|A|2450
9SS4|1|D2|A|2451
9SS4|1|D2|C|2452
9SS4|1|D2|A|2453
*
9SS4|1|D2|U|2500
9SS4|1|D2|C|2501
9SS4|1|D2|G|2502
9SS4|1|D2|A|2503
9SS4|1|D2|U|2504
9SS4|1|D2|G|2505
9SS4|1|D2|U|2506
9SS4|1|D2|C|2507
*
9SS4|1|D2|G|2582
9SS4|1|D2|G|2583
9SS4|1|D2|U|2584
9SS4|1|D2|U|2585
9SS4|1|D2|U|2586
9SS4|1|D2|A|2587
9SS4|1|D2|G|2588
*
9SS4|1|D2|C|2606
9SS4|1|D2|G|2607
9SS4|1|D2|G|2608
9SS4|1|D2|U|2609
9SS4|1|D2|C|2610
9SS4|1|D2|C|2611
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B5
- Large ribosomal subunit protein bL32
- Chain BB
- Large ribosomal subunit protein uL2
- Chain BC
- 50S ribosomal protein L3
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BO
- Large ribosomal subunit protein uL15
- Chain BP
- 50S ribosomal protein L16
- Chain BV
- Large ribosomal subunit protein uL22
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