J5_9SS5_004

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

9SS5|1|D2|U|1758, 9SS5|1|D2|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9SS5_004 not in the Motif Atlas

Homologous match to J5_7A0S_005

Geometric discrepancy: 0.2628

The information below is about J5_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.2

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

11

Unit IDs

9SS5|1|D2|G|1674
9SS5|1|D2|C|1675
9SS5|1|D2|A|1676
9SS5|1|D2|A|1677
9SS5|1|D2|A|1678
9SS5|1|D2|A|1679
9SS5|1|D2|U|1680
9SS5|1|D2|G|1681
9SS5|1|D2|G|1682
*
9SS5|1|D2|C|1706
9SS5|1|D2|G|1707
*
9SS5|1|D2|U|1751
9SS5|1|D2|C|1752
*
9SS5|1|D2|G|1756
9SS5|1|D2|A|1757
9SS5|1|D2|U|1758
9SS5|1|D2|A|1759
9SS5|1|D2|C|1760
9SS5|1|D2|C|1761
9SS5|1|D2|A|1762
9SS5|1|D2|G|1763
9SS5|1|D2|C|1764
*
9SS5|1|D2|G|1988
9SS5|1|D2|G|1989
9SS5|1|D2|C|1990

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L3

Chain BN

Large ribosomal subunit protein uL14

Chain BS

Large ribosomal subunit protein bL19