J5_9SS6_003

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9SS6|1|D1|A|109, 9SS6|1|D1|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9SS6_003 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.1148

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9SS6|1|D1|C|58
9SS6|1|D1|A|59
9SS6|1|D1|A|60
9SS6|1|D1|G|61
*
9SS6|1|D1|C|106
9SS6|1|D1|G|107
9SS6|1|D1|G|108
9SS6|1|D1|A|109
9SS6|1|D1|C|110
9SS6|1|D1|G|111
9SS6|1|D1|G|112
9SS6|1|D1|G|113
*
9SS6|1|D1|C|314
9SS6|1|D1|A|315
9SS6|1|D1|C|316
*
9SS6|1|D1|G|337
9SS6|1|D1|A|338
9SS6|1|D1|C|339
*
9SS6|1|D1|G|350
9SS6|1|D1|G|351
9SS6|1|D1|C|352
9SS6|1|D1|A|353
9SS6|1|D1|G|354

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AO

Small ribosomal subunit protein bS16

Chain AS

Small ribosomal subunit protein bS20

Chain BN

Large ribosomal subunit protein uL14