J5_9SUM_001

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AGG*CGAUGAAG*UGAACG*CG*CAU

Length

22 nucleotides

Bulged bases

9SUM|1|C|U|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.4

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9SUM|1|A|A|18
9SUM|1|A|G|19
9SUM|1|A|G|20
*
9SUM|1|C|C|35
9SUM|1|C|G|36
9SUM|1|C|A|37
9SUM|1|C|U|38
9SUM|1|C|G|39
9SUM|1|C|A|40
9SUM|1|C|A|41
9SUM|1|C|G|42
*
9SUM|1|C|U|98
9SUM|1|C|G|99
9SUM|1|C|A|100
9SUM|1|C|A|101
9SUM|1|C|C|102
9SUM|1|C|G|103
*
9SUM|1|C|C|111
9SUM|1|C|G|112
*
9SUM|1|C|C|133
9SUM|1|C|A|134
9SUM|1|C|U|135

Current chains

Chain A

25S rRNA

Chain C

5.8S rRNA

Nearby chains

Chain P

Ribosomal protein L15

Chain Z

Large ribosomal subunit protein uL23

Chain j

60S ribosomal protein L35

Chain l

Ribosomal protein L37