J5_9SUM_002
3D structure
- PDB id
- 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 9SUM|1|A|U|1379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.4
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
9SUM|1|A|G|604
9SUM|1|A|G|605
9SUM|1|A|A|606
9SUM|1|A|G|607
9SUM|1|A|U|608
9SUM|1|A|C|609
*
9SUM|1|A|G|742
9SUM|1|A|G|743
9SUM|1|A|A|744
9SUM|1|A|C|745
*
9SUM|1|A|G|884
9SUM|1|A|U|885
9SUM|1|A|U|886
9SUM|1|A|C|887
*
9SUM|1|A|G|1319
9SUM|1|A|C|1320
*
9SUM|1|A|G|1374
9SUM|1|A|C|1375
9SUM|1|A|A|1376
9SUM|1|A|G|1377
9SUM|1|A|A|1378
9SUM|1|A|U|1379
9SUM|1|A|C|1380
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- 60S ribosomal protein L4-A
- Chain N
- 60S ribosomal protein L13
- Chain P
- Ribosomal protein L15
- Chain c
- 60S ribosomal protein L28
- Chain g
- 60S ribosomal protein L32
Coloring options: