J5_9SUM_003
3D structure
- PDB id
- 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CGAG*CGGAA*UAAGAG*CGA*UAGGAG
- Length
- 24 nucleotides
- Bulged bases
- 9SUM|1|A|G|662, 9SUM|1|A|G|727, 9SUM|1|A|G|728
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9SUM_003 not in the Motif Atlas
- Homologous match to J5_9H3G_003
- Geometric discrepancy: 0.5164
- The information below is about J5_9H3G_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SUM|1|A|C|621
9SUM|1|A|G|622
9SUM|1|A|A|623
9SUM|1|A|G|624
*
9SUM|1|A|C|648
9SUM|1|A|G|649
9SUM|1|A|G|650
9SUM|1|A|A|651
9SUM|1|A|A|652
*
9SUM|1|A|U|659
9SUM|1|A|A|660
9SUM|1|A|A|661
9SUM|1|A|G|662
9SUM|1|A|A|663
9SUM|1|A|G|664
*
9SUM|1|A|C|692
9SUM|1|A|G|693
9SUM|1|A|A|694
*
9SUM|1|A|U|725
9SUM|1|A|A|726
9SUM|1|A|G|727
9SUM|1|A|G|728
9SUM|1|A|A|729
9SUM|1|A|G|730
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain N
- 60S ribosomal protein L13
- Chain S
- 60S ribosomal protein L18-A
- Chain c
- 60S ribosomal protein L28
- Chain d
- 60S ribosomal protein L29
- Chain k
- 60S ribosomal protein L36
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