J5_9SUM_004
3D structure
- PDB id
- 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- GCAAAAUGG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9SUM|1|A|G|2031, 9SUM|1|A|G|2036
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.4
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 12
Unit IDs
9SUM|1|A|G|1848
9SUM|1|A|C|1849
9SUM|1|A|A|1850
9SUM|1|A|A|1851
9SUM|1|A|A|1852
9SUM|1|A|A|1853
9SUM|1|A|U|1854
9SUM|1|A|G|1855
9SUM|1|A|G|1856
*
9SUM|1|A|U|1880
9SUM|1|A|G|1881
*
9SUM|1|A|U|2024
9SUM|1|A|G|2025
*
9SUM|1|A|C|2029
9SUM|1|A|G|2030
9SUM|1|A|G|2031
9SUM|1|A|A|2032
9SUM|1|A|C|2033
9SUM|1|A|A|2034
9SUM|1|A|A|2035
9SUM|1|A|G|2036
9SUM|1|A|G|2037
*
9SUM|1|A|C|2246
9SUM|1|A|A|2247
9SUM|1|A|C|2248
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain E
- Large ribosomal subunit protein uL3
- Chain T
- Ribosomal protein L19
- Chain X
- 60S ribosomal protein L23-B
- Chain Y
- 60S ribosomal protein L24
Coloring options: