Loop J5_9SUM

3D structure

PDB id: 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
Description: CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.99 Å

Loop

Sequence: AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 9SUM|1|A|A|2319, 9SUM|1|A|A|2717, 9SUM|1|A|U|2854, 9SUM|1|A|U|2878, 9SUM|1|A|U|2879
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: J5_83685.3
Basepair signature: cWW-F-tHS-F-F-F-cWW-F-cWW-cWW-F-F-tHH-F-F-cWW-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group: 6

Unit IDs

9SUM|1|A|A|2314
9SUM|1|A|G|2315
9SUM|1|A|A|2316
9SUM|1|A|A|2317
9SUM|1|A|G|2318
9SUM|1|A|A|2319
9SUM|1|A|C|2320
9SUM|1|A|C|2321
*
9SUM|1|A|G|2715
9SUM|1|A|G|2716
9SUM|1|A|A|2717
9SUM|1|A|U|2718
9SUM|1|A|A|2719
9SUM|1|A|A|2720
9SUM|1|A|C|2721
9SUM|1|A|U|2722
9SUM|1|A|G|2723
*
9SUM|1|A|C|2767
9SUM|1|A|U|2768
9SUM|1|A|U|2769
9SUM|1|A|C|2770
9SUM|1|A|G|2771
9SUM|1|A|A|2772
9SUM|1|A|U|2773
9SUM|1|A|G|2774
9SUM|1|A|U|2775
9SUM|1|A|C|2776
*
9SUM|1|A|G|2851
9SUM|1|A|G|2852
9SUM|1|A|U|2853
9SUM|1|A|U|2854
9SUM|1|A|U|2855
9SUM|1|A|A|2856
9SUM|1|A|G|2857
*
9SUM|1|A|U|2875
9SUM|1|A|A|2876
9SUM|1|A|G|2877
9SUM|1|A|U|2878
9SUM|1|A|U|2879
9SUM|1|A|U|2880

Current chains

Chain A: 25S rRNA

Nearby chains

Chain D: 60S ribosomal protein L2-A
Chain E: Large ribosomal subunit protein uL3
Chain F: 60S ribosomal protein L4-A
Chain c: 60S ribosomal protein L28
Chain d: 60S ribosomal protein L29
Chain l: Ribosomal protein L37

J5_9SUM_005