J5_9SUM_006
3D structure
- PDB id
- 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9SUM|1|A|G|2333, 9SUM|1|A|A|2699, 9SUM|1|A|G|2700, 9SUM|1|A|A|2701, 9SUM|1|A|A|2702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.4
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
9SUM|1|A|U|2331
9SUM|1|A|U|2332
9SUM|1|A|G|2333
9SUM|1|A|A|2334
*
9SUM|1|A|U|2511
9SUM|1|A|U|2512
9SUM|1|A|U|2513
9SUM|1|A|G|2514
*
9SUM|1|A|C|2527
9SUM|1|A|A|2528
*
9SUM|1|A|U|2550
9SUM|1|A|G|2551
*
9SUM|1|A|C|2698
9SUM|1|A|A|2699
9SUM|1|A|G|2700
9SUM|1|A|A|2701
9SUM|1|A|A|2702
9SUM|1|A|A|2703
9SUM|1|A|A|2704
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L2-A
- Chain P
- Ribosomal protein L15
- Chain S
- 60S ribosomal protein L18-A
- Chain V
- 60S ribosomal protein L21-A
- Chain c
- 60S ribosomal protein L28
- Chain d
- 60S ribosomal protein L29
- Chain q
- 60S ribosomal protein L44
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