J5_9SUM_008

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CAUG*CGAAUGGC*GAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

9SUM|1|CA|A|92, 9SUM|1|CA|C|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.4

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9SUM|1|CA|C|54
9SUM|1|CA|A|55
9SUM|1|CA|U|56
9SUM|1|CA|G|57
*
9SUM|1|CA|C|89
9SUM|1|CA|G|90
9SUM|1|CA|A|91
9SUM|1|CA|A|92
9SUM|1|CA|U|93
9SUM|1|CA|G|94
9SUM|1|CA|G|95
9SUM|1|CA|C|96
*
9SUM|1|CA|G|375
9SUM|1|CA|A|376
9SUM|1|CA|G|377
*
9SUM|1|CA|C|398
9SUM|1|CA|A|399
9SUM|1|CA|C|400
*
9SUM|1|CA|G|411
9SUM|1|CA|G|412
9SUM|1|CA|C|413
9SUM|1|CA|A|414
9SUM|1|CA|G|415

Current chains

Chain CA

18S rRNA

Nearby chains

Chain X

60S ribosomal protein L23-B

Chain ZA

40S ribosomal protein S8

Chain ZB

40S ribosomal protein S9-A

Chain ZQ

40S ribosomal protein S24

Chain w

40S ribosomal protein S4

Chain y

40S ribosomal protein S6