J5_9SYR_003

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9SYR|1|L1|G|3620, 9SYR|1|L1|G|3625

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|L1|G|2855
9SYR|1|L1|C|2856
9SYR|1|L1|A|2857
9SYR|1|L1|A|2858
9SYR|1|L1|G|2859
9SYR|1|L1|C|2860
9SYR|1|L1|OMC|2861
9SYR|1|L1|G|2862
9SYR|1|L1|G|2863
*
9SYR|1|L1|U|2887
9SYR|1|L1|G|2888
*
9SYR|1|L1|U|3613
9SYR|1|L1|G|3614
*
9SYR|1|L1|C|3618
9SYR|1|L1|G|3619
9SYR|1|L1|G|3620
9SYR|1|L1|A|3621
9SYR|1|L1|C|3622
9SYR|1|L1|C|3623
9SYR|1|L1|A|3624
9SYR|1|L1|G|3625
9SYR|1|L1|G|3626
*
9SYR|1|L1|C|3835
9SYR|1|L1|A|3836
9SYR|1|L1|C|3837

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Lb

60S ribosomal protein L3

Chain Li

60S ribosomal protein L19

Chain Lm

60S ribosomal protein L23

Chain Ln

60S ribosomal protein L24

Chain S1

Small subunit ribosomal RNA; SSU rRNA