J5_9SYR_004
3D structure
- PDB id
- 9SYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.55 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9SYR|1|L1|A|3908, 9SYR|1|L1|A|4394, 9SYR|1|L1|G|4451, 9SYR|1|L1|U|4452, 9SYR|1|L1|U|4555, 9SYR|1|L1|U|4556
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SYR|1|L1|A|3903
9SYR|1|L1|G|3904
9SYR|1|L1|A|3905
9SYR|1|L1|A|3906
9SYR|1|L1|G|3907
9SYR|1|L1|A|3908
9SYR|1|L1|C|3909
9SYR|1|L1|C|3910
*
9SYR|1|L1|OMG|4392
9SYR|1|L1|G|4393
9SYR|1|L1|A|4394
9SYR|1|L1|U|4395
9SYR|1|L1|A|4396
9SYR|1|L1|A|4397
9SYR|1|L1|C|4398
9SYR|1|L1|U|4399||A
9SYR|1|L1|G|4400
*
9SYR|1|L1|C|4444
9SYR|1|L1|U|4445
9SYR|1|L1|U|4446
9SYR|1|L1|5MC|4447
9SYR|1|L1|G|4448
9SYR|1|L1|A|4449
9SYR|1|L1|U|4450
9SYR|1|L1|G|4451
9SYR|1|L1|U|4452
9SYR|1|L1|C|4453
*
9SYR|1|L1|G|4528
9SYR|1|L1|G|4529
9SYR|1|L1|UR3|4530
9SYR|1|L1|U|4531
9SYR|1|L1|PSU|4532
9SYR|1|L1|A|4533
9SYR|1|L1|G|4534
*
9SYR|1|L1|PSU|4552
9SYR|1|L1|A|4553
9SYR|1|L1|G|4554
9SYR|1|L1|U|4555
9SYR|1|L1|U|4556
9SYR|1|L1|U|4557
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain LN
- Green fluorescent protein,Small ubiquitin-related modifier 1,Green fluorescent protein,Small ubiquitin-related modifier 1,Histone H4,X-box-binding protein 1,X-box-binding protein 1
- Chain La
- 60S ribosomal protein L8
- Chain Lb
- 60S ribosomal protein L3
- Chain Lc
- 60S ribosomal protein L4
- Chain Ls
- 60S ribosomal protein L29
- Chain S3
- Transfer RNA; tRNA
Coloring options: