J5_9SYR_006

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)

Length

26 nucleotides

Bulged bases

9SYR|1|S1|C|593

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|S1|C|30
9SYR|1|S1|U|31
9SYR|1|S1|U|32
9SYR|1|S1|G|33
9SYR|1|S1|PSU|34
*
9SYR|1|S1|A|521
9SYR|1|S1|A|522
9SYR|1|S1|A|523
9SYR|1|S1|U|524
9SYR|1|S1|A|525
9SYR|1|S1|A|526
9SYR|1|S1|C|527
*
9SYR|1|S1|G|558
9SYR|1|S1|G|559
9SYR|1|S1|A|560
9SYR|1|S1|A|561
9SYR|1|S1|U|562
9SYR|1|S1|G|563
*
9SYR|1|S1|C|592
9SYR|1|S1|C|593
9SYR|1|S1|A|594
9SYR|1|S1|U|595
*
9SYR|1|S1|A|641
9SYR|1|S1|U|642
9SYR|1|S1|A|643
9SYR|1|S1|OMG|644

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S9

Chain Sg

Small ribosomal subunit protein uS12

Chain Sn

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein