J5_9SYR_008
3D structure
- PDB id
- 9SYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.55 Å
Loop
- Sequence
- CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9SYR|1|S1|A|92, 9SYR|1|S1|C|472
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SYR|1|S1|C|53
9SYR|1|S1|A|54
9SYR|1|S1|U|55
9SYR|1|S1|G|56
*
9SYR|1|S1|C|89
9SYR|1|S1|G|90
9SYR|1|S1|A|91
9SYR|1|S1|A|92
9SYR|1|S1|PSU|93
9SYR|1|S1|G|94
9SYR|1|S1|G|95
9SYR|1|S1|C|96
*
9SYR|1|S1|G|434
9SYR|1|S1|A|435
9SYR|1|S1|OMG|436
*
9SYR|1|S1|C|457
9SYR|1|S1|A|458
9SYR|1|S1|C|459
*
9SYR|1|S1|G|470
9SYR|1|S1|G|471
9SYR|1|S1|C|472
9SYR|1|S1|A|473
9SYR|1|S1|G|474
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain Lm
- 60S ribosomal protein L23
- Chain SA
- 40S ribosomal protein S8
- Chain SB
- 40S ribosomal protein S9
- Chain Sh
- Isoform 3 of Small ribosomal subunit protein eS24
- Chain Sw
- Small ribosomal subunit protein eS4, X isoform
- Chain Sy
- 40S ribosomal protein S6
Coloring options: