J5_9SYR_009

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9SYR|1|S1|G|126, 9SYR|1|S1|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|S1|G|123
9SYR|1|S1|U|124
9SYR|1|S1|C|125
9SYR|1|S1|G|126
9SYR|1|S1|C|127
9SYR|1|S1|U|128
9SYR|1|S1|C|129
*
9SYR|1|S1|G|183
9SYR|1|S1|G|184
9SYR|1|S1|G|185
*
9SYR|1|S1|U|214
9SYR|1|S1|G|215
*
9SYR|1|S1|C|310
9SYR|1|S1|C|311
9SYR|1|S1|G|312
*
9SYR|1|S1|C|337
9SYR|1|S1|G|338
9SYR|1|S1|A|339
9SYR|1|S1|C|340
9SYR|1|S1|C|341

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein S8

Chain Sw

Small ribosomal subunit protein eS4, X isoform

Chain Sy

40S ribosomal protein S6