J5_9T1F_002

3D structure

PDB id

9T1F (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-RlmE strain, PTC class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

9T1F|1|a|U|2076, 9T1F|1|a|G|2428, 9T1F|1|a|G|2429, 9T1F|1|a|A|2430, 9T1F|1|a|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T1F|1|a|U|2074
9T1F|1|a|U|2075
9T1F|1|a|U|2076
9T1F|1|a|A|2077
*
9T1F|1|a|U|2243
9T1F|1|a|U|2244
9T1F|1|a|U|2245
9T1F|1|a|G|2246
*
9T1F|1|a|C|2258
9T1F|1|a|U|2259
*
9T1F|1|a|A|2281
9T1F|1|a|G|2282
*
9T1F|1|a|C|2427
9T1F|1|a|G|2428
9T1F|1|a|G|2429
9T1F|1|a|A|2430
9T1F|1|a|U|2431
9T1F|1|a|A|2432
9T1F|1|a|A|2433
9T1F|1|a|A|2434
9T1F|1|a|A|2435

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2

Chain k

Large ribosomal subunit protein uL15

Chain v

Large ribosomal subunit protein bL27