J5_9T2P_001

3D structure

PDB id

9T2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-9 strain, PTC class 6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

9T2P|1|a|U|2076, 9T2P|1|a|G|2428, 9T2P|1|a|G|2429, 9T2P|1|a|A|2430, 9T2P|1|a|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T2P|1|a|U|2074
9T2P|1|a|U|2075
9T2P|1|a|U|2076
9T2P|1|a|A|2077
*
9T2P|1|a|U|2243
9T2P|1|a|U|2244
9T2P|1|a|U|2245
9T2P|1|a|G|2246
*
9T2P|1|a|C|2258
9T2P|1|a|U|2259
*
9T2P|1|a|A|2281
9T2P|1|a|G|2282
*
9T2P|1|a|C|2427
9T2P|1|a|G|2428
9T2P|1|a|G|2429
9T2P|1|a|A|2430
9T2P|1|a|U|2431
9T2P|1|a|A|2432
9T2P|1|a|A|2433
9T2P|1|a|A|2434
9T2P|1|a|A|2435

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2

Chain k

Large ribosomal subunit protein uL15

Chain v

Large ribosomal subunit protein bL27