J5_9T4R_008
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUCAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 9T4R|1|a|A|2087, 9T4R|1|a|A|2473, 9T4R|1|a|U|2474, 9T4R|1|a|U|2634
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9T4R|1|a|G|2082
9T4R|1|a|A|2083
9T4R|1|a|A|2084
9T4R|1|a|A|2085
9T4R|1|a|G|2086
9T4R|1|a|A|2087
9T4R|1|a|C|2088
9T4R|1|a|C|2089
*
9T4R|1|a|G|2471
9T4R|1|a|G|2472
9T4R|1|a|A|2473
9T4R|1|a|U|2474
9T4R|1|a|A|2475
9T4R|1|a|A|2476
9T4R|1|a|C|2477
9T4R|1|a|A|2478
*
9T4R|1|a|U|2525
9T4R|1|a|C|2526
9T4R|1|a|G|2527
9T4R|1|a|A|2528
9T4R|1|a|U|2529
9T4R|1|a|G|2530
9T4R|1|a|U|2531
*
9T4R|1|a|G|2608
9T4R|1|a|U|2609
9T4R|1|a|U|2610
9T4R|1|a|C|2611
9T4R|1|a|A|2612
9T4R|1|a|G|2613
*
9T4R|1|a|C|2631
9T4R|1|a|G|2632
9T4R|1|a|G|2633
9T4R|1|a|U|2634
9T4R|1|a|C|2635
9T4R|1|a|C|2636
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain c
- Large ribosomal subunit protein uL2
- Chain d
- Large ribosomal subunit protein uL3
- Chain e
- Large ribosomal subunit protein uL4
- Chain k
- Large ribosomal subunit protein uL15
- Chain l
- Large ribosomal subunit protein uL16
- Chain v
- Large ribosomal subunit protein bL27
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: