J5_9T61_003

3D structure

PDB id

9T61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9T61|1|A|A|106, 9T61|1|A|C|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9T61_003 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.1168

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9T61|1|A|C|57
9T61|1|A|A|58
9T61|1|A|A|59
9T61|1|A|G|60
*
9T61|1|A|C|103
9T61|1|A|G|104
9T61|1|A|G|105
9T61|1|A|A|106
9T61|1|A|C|107
9T61|1|A|G|108
9T61|1|A|G|109
9T61|1|A|G|110
*
9T61|1|A|C|311
9T61|1|A|A|312
9T61|1|A|C|313
*
9T61|1|A|G|334
9T61|1|A|A|335
9T61|1|A|C|336
*
9T61|1|A|G|347
9T61|1|A|G|348
9T61|1|A|C|349
9T61|1|A|A|350
9T61|1|A|G|351

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20